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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group

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  1. miloR miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 447 28

  2. miloDE miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 78 5

  3. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 69 34

  4. DropletUtils DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 67 27

  5. MNN2017 MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 49 16

  6. scran scran Public

    Clone of the Bioconductor repository for the scran package.

    R 48 23

Repositories

Showing 10 of 90 repositories
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    MarioniLab/miloR's past year of commit activity
    R 447 GPL-3.0 28 17 0 Updated Aug 25, 2026
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    MarioniLab/DropletUtils's past year of commit activity
    R 67 27 16 1 Updated Jul 29, 2026
  • scran Public

    Clone of the Bioconductor repository for the scran package.

    MarioniLab/scran's past year of commit activity
    R 48 23 19 1 Updated May 20, 2026
  • miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    MarioniLab/miloDE's past year of commit activity
    R 78 5 6 0 Updated Nov 11, 2025
  • COSICC Public

    COSICC R package

    MarioniLab/COSICC's past year of commit activity
    R 1 0 0 0 Updated Jun 23, 2025
  • analysis_chimera_data Public

    Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

    MarioniLab/analysis_chimera_data's past year of commit activity
    HTML 0 0 0 0 Updated Mar 11, 2025
  • ExtendedMouseAtlas Public
    MarioniLab/ExtendedMouseAtlas's past year of commit activity
    1 0 0 0 Updated Feb 24, 2025
  • oor_benchmark Public

    A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

    MarioniLab/oor_benchmark's past year of commit activity
    Python 14 MIT 2 1 0 Updated Oct 21, 2024
  • cydar Public

    Clone of the Bioconductor repository for the cydar package.

    MarioniLab/cydar's past year of commit activity
    R 1 2 0 0 Updated Sep 6, 2024
  • BE_perturb_seq_drug_resistance Public
    MarioniLab/BE_perturb_seq_drug_resistance's past year of commit activity
    HTML 0 1 0 0 Updated Aug 26, 2024
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