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Qasim-Hussain-Code / metaphlan4_humann3_microbiome_pipeline

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Metagenomic functional profiling pipeline for reconstructing metabolic pathway abundances and gene families from shotgun sequencing reads. Automates marker-based taxonomic profiling and translated search to quantify community-wide metabolic potential and taxonomically attribute metabolic functions.

bioinformatics metagenomics microbiome metabolic-reconstruction metacyc biobakery functional-profiling humann3 metaphlan4 shotgun-sequencing uniref90 pathway-abundance taxonomic-attribution
  • Updated Jul 5, 2026
  • Shell

Praveen26-09 / parkinsons-oral-gut-brain-axis

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Multi-omics characterization of the oral-gut-brain axis in Parkinson's disease using shotgun metagenomics, microbial biomarker discovery, and machine learning.

machine-learning bioinformatics nextflow metagenomics xgboost network-analysis parkinsons-disease microbiome-analysis wgs-data gut-microbiome kraken2 bracken shotgun-metagenomics humann3 oral-microbiome biomarker-prediction microbial-biomarker oral-gut-brainaxis
  • Updated Jul 18, 2026
  • HTML

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