Python client for the Open Targets REST API at targetvalidation.org
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Aug 22, 2025 - Python
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opentargets
Here are 22 public repositories matching this topic...
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
enrichment genomics drug-discovery drug-repurposing proteomics omics transcriptomics opentargets enrichment-analysis enrichr targets omics-data
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Jun 4, 2026 - Python
MCP server for Open Targets data
bioinformatics genomics mcp drug-discovery opentargets biomedical-data open-targets model-context-protocol mcp-server
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May 15, 2026 - Python
Code for the data processing pipeline
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Jun 21, 2021 - Python
Agent execution layer for biology workflows: batch gene scanning, tumor cohort briefing, target discovery — with structured outputs, resume, and pipeline-ready artifacts
nodejs agent cli bioinformatics typescript genomics cbioportal cancer-genomics uniprot ncbi opentargets batch-pipeline ai-agent tumor-genomics llm-tools claude-code agent-first drug-target
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Aug 26, 2026 - TypeScript
Connecting AI to biomedical data
bioinformatics mcp drug-discovery mygene opentargets mychem biomedical-research monarch-initiative ai-agent model-context-protocol mydisease
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May 14, 2026 - Python
AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating drug discovery with Model Context Protocol (MCP) and FastMCP.
python bioinformatics mcp computational-biology drug-discovery clinical-trials uniprot opentargets ai-agents chembl model-context-protocol mcp-server fastmcp claude-code
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Sep 3, 2026 - Python
High-level feature tracker for all of Open Targets
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Sep 19, 2019
Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.
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Oct 20, 2025 - Python
A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.
bioinformatics r genomics computational-biology gtex phenotypes uniprot opentargets kegg reactome disgenet disease-gene-association hpo omim gene-prioritization literature-mining string-db phenotype-to-gene
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Apr 28, 2026 - Python
💊 MediPharma — AI-driven drug discovery. ChEMBL 2.4M compounds, OpenTargets, ADMET prediction.
open-source biostatistics drug-discovery opentargets chembl clinical-trial-design digital-twin lead-optimization pharmaceutical-ai admet-prediction ai-pharma target-screening compound-generation
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Aug 9, 2026 - Python
A GNN-based platform for predicting novel drug-target interactions to accelerate R&D.
gene-expression drug-discovery drug-repurposing pubchem signaling-pathways opentargets neo4j-graph chembl rag pytorch-geometric gnn pytorch-gnn heterogeneous-graph-transformer pharmaceutical-research string-db biogpt4 biochemical-feasibility ligand-to-protein
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Jun 12, 2026 - TypeScript
This repository contains a fully reproducible pipeline for prioritising candidate genes and pathways from GWAS summary statistics using integrative pGWAS functional annotation to identify the most compelling targets for asthma
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Sep 8, 2025 - R
A reproducible source-aware pipeline for integrating, harmonising, deduplicating, and analysing drug–disease relationships from 11 public biomedical databases, with processed data available on Zenodo.
bioinformatics computational-biology drug-repurposing opentargets drugcentral chembl drug-disease-associations
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Jun 5, 2026 - Python
Agent-ready CLI for Open Targets data
python graphql cli bioinformatics genomics genetics drug-discovery opentargets codex ai-agent claude-code
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May 15, 2026 - Python
Open Targets Platform REST API
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Jun 9, 2026 - TypeScript
An agentic AI pipeline for annotating genetic variants, linking them to disease evidence, and generating structured interpretation reports using biomedical APIs and LLM reasoning.
python bioinformatics snps genomics opentargets vep genetic-variants variant-analysis precision-medicine rag ai-pipelines genomics-pipeline
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Mar 10, 2026 - Python
Unofficial community-maintained Python client for the Open Targets Platform GraphQL API
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Jun 21, 2026 - Python
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Jan 6, 2023 - JavaScript
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