vcftools

Learning the Variant Call Format

A python parser to simplify and build the VCF (Variant Call Format).

tips and tricks in genome-wide association studies - a tutorial

Scripts in R for Landscape Genomics Analyses v.2

Repository for Blog Article on Parsing with cyvcf2. Article ==>

Allows one to manipulate a VCF as a MultiIndex Pandas DataFrame

A .NET vCard parser with Android contacts2.db and MeCard support

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

Variant annotation and filtration server ALAPY Genome Explorer

Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE

Vcard generator library for PHP

summarize and visualize the genotypes categories per sample in a VCF file

Useful NGS utilities for everyday use in the form of stand-alone tool.

A Python CLI tool that converts vCard (.vcf) contact exports into text, JSON, CSV, Markdown, HTML, PDF, Word, SQL, or a birthday/anniversary calendar, featuring smart duplicate detection, multi-file merging, and an interactive terminal preview. No contacts app, no dependencies required.

Form interface so users can custom filter existing VCF files and export in a variety of formats.

A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already exist in vcftools, but it seems it stopped being updated. so you can use these scripts to do various tasks with them

A powerful, modern web-based contact management application that allows you to import, edit, and export VCF (vCard) contact files directly in your browser.

A public, web-based homozygosity mapping tool